User profiles for J. C. Gee

James Gee

University of Pennsylvania, University of Washington
Verified email at upenn.edu
Cited by 51159

[HTML][HTML] Anatomical structures, cell types and biomarkers of the Human Reference Atlas

K Börner, SA Teichmann, EM Quardokus, JC Gee… - Nature cell …, 2021 - nature.com
The Human Reference Atlas (HRA) aims to map all of the cells of the human body to advance
biomedical research and clinical practice. This Perspective presents collaborative work by …

User-guided 3D active contour segmentation of anatomical structures: significantly improved efficiency and reliability

…, J Piven, HC Hazlett, RG Smith, S Ho, JC Gee… - Neuroimage, 2006 - Elsevier
Active contour segmentation and its robust implementation using level set methods are well-established
theoretical approaches that have been studied thoroughly in the image analysis …

N4ITK: improved N3 bias correction

…, A Egan, PA Yushkevich, JC Gee - IEEE transactions on …, 2010 - ieeexplore.ieee.org
… Egan, PA Yushkevich, and JC Gee are with the Department of Radiology, University of …
[9] NJ Tustison and JC Gee, “N-d Cb -spline scattered data approximation,” Insight J., pp. 1–…

Symmetric diffeomorphic image registration with cross-correlation: evaluating automated labeling of elderly and neurodegenerative brain

BB Avants, CL Epstein, M Grossman, JC Gee - Medical image analysis, 2008 - Elsevier
One of the most challenging problems in modern neuroimaging is detailed characterization
of neurodegeneration. Quantifying spatial and longitudinal atrophy patterns is an important …

A reproducible evaluation of ANTs similarity metric performance in brain image registration

…, NJ Tustison, G Song, PA Cook, A Klein, JC Gee - Neuroimage, 2011 - Elsevier
The United States National Institutes of Health (NIH) commit significant support to open-source
data and software resources in order to foment reproducibility in the biomedical imaging …

[HTML][HTML] Computational analysis in epilepsy neuroimaging: a survey of features and methods

LG Kini, JC Gee, B Litt - NeuroImage: Clinical, 2016 - Elsevier
Epilepsy affects 65 million people worldwide, a third of whom have seizures that are resistant
to anti-epileptic medications. Some of these patients may be amenable to surgical therapy …

Spatial transformations of diffusion tensor magnetic resonance images

…, C Pierpaoli, PJ Basser, JC Gee - IEEE transactions on …, 2001 - ieeexplore.ieee.org
… Pierpaoli, PJ Basser, and JC Gee, “Techniques for spatial normalization of diffusion
tensor images,” in Proc. SPIE Medical Imaging, 2000, vol. 3979, KM Hanson, Ed., 2000, pp. …

The optimal template effect in hippocampus studies of diseased populations

…, J Pluta, D Minkoff, M Korczykowski, J Detre, JC Gee - Neuroimage, 2010 - Elsevier
We evaluate the impact of template choice on template-based segmentation of the hippocampus
in epilepsy. Four dataset-specific strategies are quantitatively contrasted: the “closest to …

Large-scale evaluation of ANTs and FreeSurfer cortical thickness measurements

…, JT Duda, BM Kandel, N van Strien, JR Stone, JC Gee… - Neuroimage, 2014 - Elsevier
Many studies of the human brain have explored the relationship between cortical thickness
and cognition, phenotype, or disease. Due to the subjectivity and time requirements in …

[HTML][HTML] The Insight ToolKit image registration framework

…, M Stauffer, G Song, B Wu, JC Gee - Frontiers in …, 2014 - frontiersin.org
Publicly available scientific resources help establish evaluation standards, provide a platform
for teaching and improve reproducibility. Version 4 of the Insight ToolKit (ITK 4 ) seeks to …