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Research Article

Influence of Oenococcus oeni and Brettanomyces bruxellensis on Wine Microbial Taxonomic and Functional Potential Profiles

Marie Lisandra Zepeda-Mendoza, Nathalia Kruse Edwards, Mikkel Gulmann Madsen, Martin Abel-Kistrup, Lara Puetz, Thomas Sicheritz-Ponten, Jan H. Swiegers
Am J Enol Vitic.  2018  69: 321-333  ; DOI: 10.5344/ajev.2018.17092
Marie Lisandra Zepeda-Mendoza
1Chr. Hansen A/S, Bøge Allé 10, 2970 Hørsholm, Denmark
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  • For correspondence: dkhsw@chr-hansen.com dklize@chr-hansen.com
Nathalia Kruse Edwards
1Chr. Hansen A/S, Bøge Allé 10, 2970 Hørsholm, Denmark
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Mikkel Gulmann Madsen
1Chr. Hansen A/S, Bøge Allé 10, 2970 Hørsholm, Denmark
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Martin Abel-Kistrup
1Chr. Hansen A/S, Bøge Allé 10, 2970 Hørsholm, Denmark
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Lara Puetz
2Centre for Geo-Genetics, Natural History Museum of Denmark, University of Copenhagen, Øster Voldgade 5-7, 1350 Copenhagen K, Denmark
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Thomas Sicheritz-Ponten
3Center for Biological Sequence Analysis, Department of Bio and Health Informatics, Technical University of Denmark, Anker Engelunds Vej 1 Bygning 101A, 2800 Kgs. Lyngby, Denmark
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Jan H. Swiegers
1Chr. Hansen A/S, Bøge Allé 10, 2970 Hørsholm, Denmark
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Abstract

The interactions between lactic acid bacteria, yeast, and other wine microbiota impact on wine quality. Some strains of lactic acid bacteria Oenococcus oeni possess cinnamoyl esterase activity that releases hydroxycinnamic acids (HCAs) that can subsequently be processed by some strains of the spoilage yeast Brettanomyces bruxellensis and lead to off-flavor compounds. Using metagenomic analyses, this study investigated the influence of O. oeni and B. bruxellensis on the taxonomic and functional potential profiles of the microbial community of Cabernet Sauvignon wine, particularly regarding flavor formation. Metagenomic datasets were generated from inoculations of three strains of B. bruxellensis, in combination with two O. oeni strains, with and without cinnamoyl esterase activity. Effect on the microbial profiles was found to depend on the O. oeni and B. bruxellensis strains being combined and on the abundance that the inoculants reach in the final wine, which depends on unidentified conditions (e.g., derived from microbial interactions). This study confirmed that the potential of B. bruxellensis to produce off-flavor compounds from HCAs is strain dependent. Interestingly, the samples without microbial inoculants also had this potential, suggesting that microbiota from the native grape could also influence the levels of HCAs. The metagenomic analyses complemented by experimental validation also found that the presence of B. bruxellensis did not interfere with the microbial functional potential to transform l-malic acid into l-lactic acid, which typically leads to a less acidic flavor. We show that metagenomic approaches can help uncover the complex wine microbial community traits, such as flavor, impacted by the simultaneous presence of O. oeni and B. bruxellensis.

  • Brettanomyces
  • hydroxycinnamic acids
  • metagenomics
  • microbiome
  • Oenococcus oeni
  • Received October 2017.
  • Revision received February 2018.
  • Revision received April 2018.
  • Accepted April 2018.
  • Published online October 2018
  • ©2018 by the American Society for Enology and Viticulture
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Influence of Oenococcus oeni and Brettanomyces bruxellensis on Wine Microbial Taxonomic and Functional Potential Profiles
Marie Lisandra Zepeda-Mendoza, Nathalia Kruse Edwards, Mikkel Gulmann Madsen, Martin Abel-Kistrup, Lara Puetz, Thomas Sicheritz-Ponten, Jan H. Swiegers
Am J Enol Vitic.  2018  69: 321-333  ; DOI: 10.5344/ajev.2018.17092
Marie Lisandra Zepeda-Mendoza
1Chr. Hansen A/S, Bøge Allé 10, 2970 Hørsholm, Denmark
  • Find this author on Google Scholar
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  • For correspondence: dkhsw@chr-hansen.com dklize@chr-hansen.com
Nathalia Kruse Edwards
1Chr. Hansen A/S, Bøge Allé 10, 2970 Hørsholm, Denmark
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Mikkel Gulmann Madsen
1Chr. Hansen A/S, Bøge Allé 10, 2970 Hørsholm, Denmark
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Martin Abel-Kistrup
1Chr. Hansen A/S, Bøge Allé 10, 2970 Hørsholm, Denmark
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Lara Puetz
2Centre for Geo-Genetics, Natural History Museum of Denmark, University of Copenhagen, Øster Voldgade 5-7, 1350 Copenhagen K, Denmark
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Thomas Sicheritz-Ponten
3Center for Biological Sequence Analysis, Department of Bio and Health Informatics, Technical University of Denmark, Anker Engelunds Vej 1 Bygning 101A, 2800 Kgs. Lyngby, Denmark
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Jan H. Swiegers
1Chr. Hansen A/S, Bøge Allé 10, 2970 Hørsholm, Denmark
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  • For correspondence: dkhsw@chr-hansen.com dklize@chr-hansen.com

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Influence of Oenococcus oeni and Brettanomyces bruxellensis on Wine Microbial Taxonomic and Functional Potential Profiles
Marie Lisandra Zepeda-Mendoza, Nathalia Kruse Edwards, Mikkel Gulmann Madsen, Martin Abel-Kistrup, Lara Puetz, Thomas Sicheritz-Ponten, Jan H. Swiegers
Am J Enol Vitic.  2018  69: 321-333  ; DOI: 10.5344/ajev.2018.17092
Marie Lisandra Zepeda-Mendoza
1Chr. Hansen A/S, Bøge Allé 10, 2970 Hørsholm, Denmark
  • Find this author on Google Scholar
  • Find this author on PubMed
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  • For correspondence: dkhsw@chr-hansen.com dklize@chr-hansen.com
Nathalia Kruse Edwards
1Chr. Hansen A/S, Bøge Allé 10, 2970 Hørsholm, Denmark
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Mikkel Gulmann Madsen
1Chr. Hansen A/S, Bøge Allé 10, 2970 Hørsholm, Denmark
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Martin Abel-Kistrup
1Chr. Hansen A/S, Bøge Allé 10, 2970 Hørsholm, Denmark
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Lara Puetz
2Centre for Geo-Genetics, Natural History Museum of Denmark, University of Copenhagen, Øster Voldgade 5-7, 1350 Copenhagen K, Denmark
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Thomas Sicheritz-Ponten
3Center for Biological Sequence Analysis, Department of Bio and Health Informatics, Technical University of Denmark, Anker Engelunds Vej 1 Bygning 101A, 2800 Kgs. Lyngby, Denmark
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Jan H. Swiegers
1Chr. Hansen A/S, Bøge Allé 10, 2970 Hørsholm, Denmark
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  • For correspondence: dkhsw@chr-hansen.com dklize@chr-hansen.com
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