Do vertebrate gut metagenomes confer rapid ecological adaptation?
…, O Aizpurua, K Bohmann, ML Zepeda-Mendoza… - Trends in ecology & …, 2016 - cell.com
During times of rapid environmental change, survival of most vertebrate populations
depends on their phenomic plasticity. Although differential gene-expression and post-transcriptional …
depends on their phenomic plasticity. Although differential gene-expression and post-transcriptional …
[HTML][HTML] Second generation sequencing and morphological faecal analysis reveal unexpected foraging behaviour by Myotis nattereri (Chiroptera, Vespertilionidae) in …
…, K Bohmann, MTP Gilbert, ML Zepeda-Mendoza… - Frontiers in …, 2014 - Springer
Background Temperate winters produce extreme energetic challenges for small insectivorous
mammals. Some bat species inhabiting locations with mild temperate winters forage …
mammals. Some bat species inhabiting locations with mild temperate winters forage …
Environmental genes and genomes: understanding the differences and challenges in the approaches and software for their analyses
ML Zepeda Mendoza, T Sicheritz-Ponten… - Briefings in …, 2015 - academic.oup.com
DNA-based taxonomic and functional profiling is widely used for the characterization of
organismal communities across a rapidly increasing array of research areas that include the role …
organismal communities across a rapidly increasing array of research areas that include the role …
[HTML][HTML] Protective role of the vulture facial skin and gut microbiomes aid adaptation to scavenging
ML Zepeda Mendoza, M Roggenbuck… - Acta Veterinaria …, 2018 - Springer
Background Vultures have adapted the remarkable ability to feed on carcasses that may
contain microorganisms that would be pathogenic to most other animals. The holobiont concept …
contain microorganisms that would be pathogenic to most other animals. The holobiont concept …
[HTML][HTML] DAMe: a toolkit for the initial processing of datasets with PCR replicates of double-tagged amplicons for DNA metabarcoding analyses
ML Zepeda-Mendoza, K Bohmann… - BMC Research …, 2016 - Springer
Background DNA metabarcoding is an approach for identifying multiple taxa in an environmental
sample using specific genetic loci and taxa-specific primers. When combined with high-…
sample using specific genetic loci and taxa-specific primers. When combined with high-…
Mitogenomics of the extinct cave lion, Panthera spelaea (Goldfuss, 1810), resolve its position within the Panthera cats
The extinct cave lion (Panthera spelaea) was an apex predator of the Pleistocene, and one
of the largest felid species ever to exist. We report the first mitochondrial genome sequences …
of the largest felid species ever to exist. We report the first mitochondrial genome sequences …
[HTML][HTML] Metagenomic analysis from the interior of a speleothem in Tjuv-Ante's cave, northern Sweden
ML Zepeda Mendoza, J Lundberg, M Ivarsson… - PLoS …, 2016 - journals.plos.org
Speleothems are secondary mineral deposits normally formed by water supersaturated with
calcium carbonate percolating into underground caves, and are often associated with low-…
calcium carbonate percolating into underground caves, and are often associated with low-…
Influence of Oenococcus oeni and Brettanomyces bruxellensis on wine microbial taxonomic and functional potential profiles
ML Zepeda-Mendoza, NK Edwards… - … Journal of Enology …, 2018 - Am Soc Enol Viticulture
The interactions between lactic acid bacteria, yeast, and other wine microbiota impact on wine
quality. Some strains of lactic acid bacteria Oenococcus oeni possess cinnamoyl esterase …
quality. Some strains of lactic acid bacteria Oenococcus oeni possess cinnamoyl esterase …
[HTML][HTML] No longer locally extinct? Tracing the origins of a lion (Panthera leo) living in Gabon
Lions (Panthera leo) are of particular conservation concern due to evidence of recent,
widespread population declines in what has hitherto been seen as a common species, robust to …
widespread population declines in what has hitherto been seen as a common species, robust to …
[HTML][HTML] DivA: detection of non-homologous and very divergent regions in protein sequence alignments
ML Zepeda Mendoza, S Nygaard, RR da Fonseca - BMC Research Notes, 2014 - Springer
Background Sequence alignments are used to find evidence of homology but sometimes
contain regions that are difficult to align which can interfere with the quality of the subsequent …
contain regions that are difficult to align which can interfere with the quality of the subsequent …