Do vertebrate gut metagenomes confer rapid ecological adaptation?

…, O Aizpurua, K Bohmann, ML Zepeda-Mendoza… - Trends in ecology & …, 2016 - cell.com
During times of rapid environmental change, survival of most vertebrate populations
depends on their phenomic plasticity. Although differential gene-expression and post-transcriptional …

[HTML][HTML] Second generation sequencing and morphological faecal analysis reveal unexpected foraging behaviour by Myotis nattereri (Chiroptera, Vespertilionidae) in …

…, K Bohmann, MTP Gilbert, ML Zepeda-Mendoza… - Frontiers in …, 2014 - Springer
Background Temperate winters produce extreme energetic challenges for small insectivorous
mammals. Some bat species inhabiting locations with mild temperate winters forage …

Environmental genes and genomes: understanding the differences and challenges in the approaches and software for their analyses

ML Zepeda Mendoza, T Sicheritz-Ponten… - Briefings in …, 2015 - academic.oup.com
DNA-based taxonomic and functional profiling is widely used for the characterization of
organismal communities across a rapidly increasing array of research areas that include the role …

[HTML][HTML] Protective role of the vulture facial skin and gut microbiomes aid adaptation to scavenging

ML Zepeda Mendoza, M Roggenbuck… - Acta Veterinaria …, 2018 - Springer
Background Vultures have adapted the remarkable ability to feed on carcasses that may
contain microorganisms that would be pathogenic to most other animals. The holobiont concept …

[HTML][HTML] DAMe: a toolkit for the initial processing of datasets with PCR replicates of double-tagged amplicons for DNA metabarcoding analyses

ML Zepeda-Mendoza, K Bohmann… - BMC Research …, 2016 - Springer
Background DNA metabarcoding is an approach for identifying multiple taxa in an environmental
sample using specific genetic loci and taxa-specific primers. When combined with high-…

Mitogenomics of the extinct cave lion, Panthera spelaea (Goldfuss, 1810), resolve its position within the Panthera cats

R Barnett, MLZ Mendoza, AER Soares, SYW Ho… - 2016 - qspace.qu.edu.qa
The extinct cave lion (Panthera spelaea) was an apex predator of the Pleistocene, and one
of the largest felid species ever to exist. We report the first mitochondrial genome sequences …

[HTML][HTML] Metagenomic analysis from the interior of a speleothem in Tjuv-Ante's cave, northern Sweden

ML Zepeda Mendoza, J Lundberg, M Ivarsson… - PLoS …, 2016 - journals.plos.org
Speleothems are secondary mineral deposits normally formed by water supersaturated with
calcium carbonate percolating into underground caves, and are often associated with low-…

Influence of Oenococcus oeni and Brettanomyces bruxellensis on wine microbial taxonomic and functional potential profiles

ML Zepeda-Mendoza, NK Edwards… - … Journal of Enology …, 2018 - Am Soc Enol Viticulture
The interactions between lactic acid bacteria, yeast, and other wine microbiota impact on wine
quality. Some strains of lactic acid bacteria Oenococcus oeni possess cinnamoyl esterase …

[HTML][HTML] No longer locally extinct? Tracing the origins of a lion (Panthera leo) living in Gabon

R Barnett, MHS Sinding, FG Vieira, MLZ Mendoza… - Conservation …, 2018 - Springer
Lions (Panthera leo) are of particular conservation concern due to evidence of recent,
widespread population declines in what has hitherto been seen as a common species, robust to …

[HTML][HTML] DivA: detection of non-homologous and very divergent regions in protein sequence alignments

ML Zepeda Mendoza, S Nygaard, RR da Fonseca - BMC Research Notes, 2014 - Springer
Background Sequence alignments are used to find evidence of homology but sometimes
contain regions that are difficult to align which can interfere with the quality of the subsequent …