Data supplements
Supplemental Table 1 Tukey test results on effect of trial date on the bacterial titer. Biocontrols and five 14399 population genotypes tested in all three trial dates were included in the analysis. Trials in 2015 (TD151217) and 2016 (TD160809) were statistically the same (p < 0.05) and the trial in 2017 was different from both. STD, standard deviation; Q25, quantile 25; Q50, quantile 50; Q75, quantile 75.
Supplemental Table 2 Quantitative trait loci results for chromosome 14 in population 14399 from 2015, 2016, and 2017 trials. A total of 318 individuals were used for the analysis. Limit of detection (LOD) values in bold are statistically significant according to the LOD threshold calculated with the permutation test. The permutation test values were 1.5, 1.6, and 1.7 for bacterial titer, cane maturation index (CMI), and leaf scorch-leaf loss (LS-LL), respectively. The underlined values in locus ch14-78 are the highest percentages explained by the phenotypic variation through the chromosome.
Supplemental Table 3 One-way analysis of variance Kruskal-Wallis test results from the quantitative trait loci analysis with the consensus map showing the K* significance value for all chromosomes. Markers on chromosome 14 were highly significant for all three phenotypic parameters. Leaf scorch-leaf loss (LS-LL) showed multiple markers outside chromosome 14 to be significant. Markers not shown did not show high significance (p < 0.01) for any of the phenotypic parameters. CMI, cane maturation index. K*, Kruskal-Wallis test statistic.
Supplemental Figure 1 Consensus linkage genetic map of the pBC1 population 14399 (Vitis vinifera and Vitis arizonica/monticola hybrids) generated with 177 polymorphic SSRs using JoinMap4. Markers on chromosomes 5, 7, 12, and 19 did not have sufficient linkage and were linked to two different groups.